In the absence of nucleic acid sequences, a reasonably reliable distinction of P. cactorum from other Phytophthora species with similar morphology can be made with observation that the isolate in question (1) is homothallic, (2) has paragynous antheridia that arise from the parent hypha very close to - if not intertwined with - the oogonium stalk, (3) has plerotic and aplerotic oospores, and (4) produces caducous and conspicuously papillate sporangia with one apex and a short pedicel. P. cactorum also produces chlamydospores when stressed.
Two species possibly confused with P. cactorum based solely on morphological features are P. hedraiandra (compare: antheridia sessile or on very short stalks) and P. clandestina (compare: sporangia with multiple papillae and a conspicuous basal plug, stubbornly caducous until zoospore release, hyphal swellings common). Unlike P. cactorum, P. hedraiandra and P. clandestina can have both paragynous and amphigynous antheridial attachments.
Host range and geographic distribution of the various isolates can also be helpful. P. cactorum has a wide range of plant hosts and occurs in temperate sites throughout the globe. In contrast, P. hedraiandra is so far known only attacking rhodendron and viburnum plants in a few sites in Minnesota and Virginia (USA) and the Netherlands, Italy and Spain (Europe). Similarly, P. clandestina has been found only attacking subterranean clover in Australia.
In the event that one starts first with nucleic acid sequences and then presumes to confirm ID by morphological features, the closest relative on the phylogenetic tree, P. pseudotsugae, has noncaducous, predominantly spherical sporangia and oospores that are up to 20%(= 5μm) larger in diameter than those of P. cactorum.
Overall, P. cactorum is among those species of Phytophthora that can be readily identified by morphology from isolation plates. P. cactorum is the only one having exclusively paragynous antheridial attachment among all homothallic species producing caducous and conspicuously papillate sporangia with a short pedicel.