<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Grünwald, Niklaus J.</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Genome sequences of Phytophthora enable translational plant disease management and accelerate research</style></title><secondary-title><style face="normal" font="default" size="100%">Canadian Journal of Plant Pathology</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2012</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.tandfonline.com/doi/abs/10.1080/07060661.2012.664568</style></url></web-urls></urls><number><style face="normal" font="default" size="100%">1</style></number><volume><style face="normal" font="default" size="100%">34</style></volume><pages><style face="normal" font="default" size="100%">13-19</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;Whole and partial genome sequences are becoming available at an ever-increasing pace. For many plant pathogen systems, we are moving into the era of genome resequencing. The first &lt;em&gt;Phytophthora&lt;/em&gt; genomes, &lt;em&gt;P. ramorum&lt;/em&gt; and &lt;em&gt;P. sojae&lt;/em&gt;, became available in 2004, followed shortly by &lt;em&gt;P. infestans&lt;/em&gt; in 2006. Availability of whole genome sequences has provided rapid and immediate advances in several areas also resulting in many practical applications and critical new insights. Availability of comparative genome data facilitated discovery of new classes of effectors, such as the RxLR-dEER and crinkler effector families. Genome data also enabled development of molecular markers for population genomic approaches that provided critical new insights into the evolutionary history of species and clades of &lt;em&gt;Phytophthora&lt;/em&gt;. Several select examples of advances resulting from comparative genomic approaches in a concerted effort of the Oomycete research community are reviewed.&lt;/p&gt;</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Grünwald, Niklaus J.</style></author><author><style face="normal" font="default" size="100%">Garbelotto, Matteo</style></author><author><style face="normal" font="default" size="100%">Goss, Erica M.</style></author><author><style face="normal" font="default" size="100%">Heungens, Kurt</style></author><author><style face="normal" font="default" size="100%">Prospero, Simone</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Emergence of the sudden oak death pathogen Phytophthora ramorum</style></title><secondary-title><style face="normal" font="default" size="100%">Trends in Microbiology</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2012</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://www.sciencedirect.com/science/article/pii/S0966842X11002277</style></url></web-urls></urls><number><style face="normal" font="default" size="100%">3</style></number><volume><style face="normal" font="default" size="100%">20</style></volume><pages><style face="normal" font="default" size="100%">131 - 138</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;The recently emerged plant pathogen &lt;em&gt;Phytophthora ramorum&lt;/em&gt; is responsible for causing the sudden oak death epidemic. This review documents the emergence of &lt;em&gt;P. ramorum&lt;/em&gt; based on evolutionary and population genetic analyses. Currently infection by &lt;em&gt;P. ramorum&lt;/em&gt; occurs only in Europe and North America and three clonal lineages are distinguished: EU1, NA1 and NA2. Ancient divergence of these lineages supports a scenario in which &lt;em&gt;P. ramorum&lt;/em&gt; originated from reproductively isolated populations and underwent at least four global migration events. This recent work sheds new light on mechanisms of emergence of exotic pathogens and provides crucial insights into migration pathways.&lt;/p&gt;</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Grünwald, Niklaus J.</style></author><author><style face="normal" font="default" size="100%">Goss, Erica M.</style></author><author><style face="normal" font="default" size="100%">Ivors, Kelly</style></author><author><style face="normal" font="default" size="100%">Garbelotto, Matteo</style></author><author><style face="normal" font="default" size="100%">Martin, Frank N.</style></author><author><style face="normal" font="default" size="100%">Prospero, Simone</style></author><author><style face="normal" font="default" size="100%">Everett Hansen</style></author><author><style face="normal" font="default" size="100%">Peter J.M. Bonants</style></author><author><style face="normal" font="default" size="100%">Hamelin, Richard C.</style></author><author><style face="normal" font="default" size="100%">Chastagner, Gary</style></author><author><style face="normal" font="default" size="100%">Werres, Sabine</style></author><author><style face="normal" font="default" size="100%">Rizzo, David M.</style></author><author><style face="normal" font="default" size="100%">Abad, Gloria</style></author><author><style face="normal" font="default" size="100%">Beales, Paul</style></author><author><style face="normal" font="default" size="100%">Bilodeau, Guillaume J.</style></author><author><style face="normal" font="default" size="100%">Cheryl L. Blomquist</style></author><author><style face="normal" font="default" size="100%">Brasier,Clive</style></author><author><style face="normal" font="default" size="100%">Brière, Stephan C.</style></author><author><style face="normal" font="default" size="100%">Chandelier, Anne</style></author><author><style face="normal" font="default" size="100%">Davidson, Jennifer M.</style></author><author><style face="normal" font="default" size="100%">Denman,Sandra</style></author><author><style face="normal" font="default" size="100%">Elliott, Marianne</style></author><author><style face="normal" font="default" size="100%">Susan J. Frankel</style></author><author><style face="normal" font="default" size="100%">Goheen, Ellen M.</style></author><author><style face="normal" font="default" size="100%">de Gruyter, Hans</style></author><author><style face="normal" font="default" size="100%">Heungens, Kurt</style></author><author><style face="normal" font="default" size="100%">James, Delano</style></author><author><style face="normal" font="default" size="100%">Kanaskie, Alan</style></author><author><style face="normal" font="default" size="100%">Michael G McWilliams</style></author><author><style face="normal" font="default" size="100%">Man in ‘t Veld, Willem</style></author><author><style face="normal" font="default" size="100%">Moralejo, Eduardo</style></author><author><style face="normal" font="default" size="100%">Osterbauer, Nancy K.</style></author><author><style face="normal" font="default" size="100%">Palm, Mary E.</style></author><author><style face="normal" font="default" size="100%">Parke, Jennifer L.</style></author><author><style face="normal" font="default" size="100%">Sierra, Ana Maria Perez</style></author><author><style face="normal" font="default" size="100%">Shamoun, Simon F.</style></author><author><style face="normal" font="default" size="100%">Shishkoff, Nina</style></author><author><style face="normal" font="default" size="100%">Tooley, Paul W.</style></author><author><style face="normal" font="default" size="100%">Vettraino, Anna Maria</style></author><author><style face="normal" font="default" size="100%">Webber,Joan</style></author><author><style face="normal" font="default" size="100%">Timothy L. Widmer</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Standardizing the nomenclature for clonal lineages of the sudden oak death pathogen, Phytophthora ramorum</style></title><secondary-title><style face="normal" font="default" size="100%">Phytopathology</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2009</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://apsjournals.apsnet.org/doi/abs/10.1094/PHYTO-99-7-0792</style></url></web-urls></urls><number><style face="normal" font="default" size="100%">7</style></number><volume><style face="normal" font="default" size="100%">99</style></volume><pages><style face="normal" font="default" size="100%">792-795</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;{&lt;em&gt;Phytophthora ramorum&lt;/em&gt;, the causal agent of sudden oak death and &lt;em&gt;ramorum&lt;/em&gt; blight, is known to exist as three distinct clonal lineages which can only be distinguished by performing molecular marker-based analyses. However, in the recent literature there exists no consensus on naming of these lineages. Here we propose a system for naming clonal lineages of &lt;em&gt;P. ramorum&lt;/em&gt; based on a consensus established by the &lt;em&gt;P. ramorum&lt;/em&gt; research community. Clonal lineages are named with a two letter identifier for the continent on which they were first found (e.g.&lt;/p&gt;</style></abstract><notes><style face="normal" font="default" size="100%">PMID: 19522576</style></notes></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Grünwald, Niklaus J.</style></author><author><style face="normal" font="default" size="100%">Goss, Erica M.</style></author><author><style face="normal" font="default" size="100%">Press, Caroline M.</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals</style></title><secondary-title><style face="normal" font="default" size="100%">Molecular Plant Pathology</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2008</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://dx.doi.org/10.1111/j.1364-3703.2008.00500.x</style></url></web-urls></urls><number><style face="normal" font="default" size="100%">6</style></number><publisher><style face="normal" font="default" size="100%">Blackwell Publishing Ltd</style></publisher><volume><style face="normal" font="default" size="100%">9</style></volume><pages><style face="normal" font="default" size="100%">729–740</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;&lt;em&gt;Phytophthora ramorum&lt;/em&gt; is an oomycete plant pathogen classified in the kingdom &lt;em&gt;Stramenopila. P.&amp;nbsp;ramorum&lt;/em&gt; is the causal agent of sudden oak death on coast live oak and tanoak as well as &lt;em&gt;ramorum&lt;/em&gt; blight on woody ornamental and forest understorey plants. It causes stem cankers on trees, and leaf blight or stem dieback on ornamentals and understorey forest species. This pathogen is managed in the USA and Europe by eradication where feasible, by containment elsewhere and by quarantine in many parts of the world. Genomic resources provide information on genes of interest to disease management and have improved tremendously since sequencing the genome in 2004. This review provides a current overview of the pathogenicity, population genetics, evolution and genomics of &lt;em&gt;P.&amp;nbsp;ramorum.&lt;/em&gt; Taxonomy: &lt;em&gt;Phytophthora ramorum&lt;/em&gt; (Werres, De Cock &amp;amp; Man in’t Veld): kingdom &lt;em&gt;Stramenopila&lt;/em&gt;; phylum &lt;em&gt;Oomycota&lt;/em&gt;; class &lt;em&gt;Peronosporomycetidae&lt;/em&gt;; order &lt;em&gt;Pythiales&lt;/em&gt;; family &lt;em&gt;Pythiaceae&lt;/em&gt;; genus &lt;em&gt;Phytophthora&lt;/em&gt;.Host range: The host range is very large and the list of known hosts continues to expand at the time of writing. Coast live oak and tanoak are ecologically, economically and culturally important forest hosts in the USA. &lt;em&gt;Rhododendron, Viburnum, Pieris, Syringa&lt;/em&gt; and &lt;em&gt;Camellia&lt;/em&gt; are key ornamental hosts on which &lt;em&gt;P.&amp;nbsp;ramorum&lt;/em&gt; has been found repeatedly, some of which have been involved in moving the pathogen via nursery shipments. Disease symptoms: &lt;em&gt;P.&amp;nbsp;ramorum&lt;/em&gt; causes two different diseases with differing symptoms: sudden oak death (bleeding lesions, stem cankers) on oaks and &lt;em&gt;ramorum&lt;/em&gt; blight (twig dieback and/or foliar lesions) on tree and woody ornamental hosts.Useful websites: http://nature.berkeley.edu/comtf/, http://rapra.csl.gov.uk/, http://www.aphis.usda.gov/plant_health/plant_pest_info/pram/index.shtml, http://genome.jgi-psf.org/Phyra1_1/Phyra1_1.home.html, http://pamgo.vbi.vt.edu/, http://pmgn.vbi.vt.edu/, http://vmd.vbi.vt.edu./, http://web.science.oregonstate.edu/bpp/labs/grunwald/resources.htm, http://www.defra.gov.uk/planth/pramorum.htm, http://www.invasive.org/browse/subject.cfm?sub=4603, http://www.forestry.gov.uk/forestry/WCAS-4Z5JLL&lt;/p&gt;</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Grünwald, Niklaus J.</style></author><author><style face="normal" font="default" size="100%">Martin, Frank N.</style></author><author><style face="normal" font="default" size="100%">Larsen, Meredith M.</style></author><author><style face="normal" font="default" size="100%">Sullivan, Christopher M.</style></author><author><style face="normal" font="default" size="100%">Press, Caroline M.</style></author><author><style face="normal" font="default" size="100%">Michael D. Coffey</style></author><author><style face="normal" font="default" size="100%">Hansen, Everett M.</style></author><author><style face="normal" font="default" size="100%">Parke, Jennifer L.</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Phytophthora-ID.org: a sequence-based Phytophthora identification tool</style></title><secondary-title><style face="normal" font="default" size="100%">Plant Disease</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2011</style></year></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://apsjournals.apsnet.org/doi/abs/10.1094/PDIS-08-10-0609</style></url></web-urls></urls><number><style face="normal" font="default" size="100%">3</style></number><volume><style face="normal" font="default" size="100%">95</style></volume><pages><style face="normal" font="default" size="100%">337-342</style></pages><language><style face="normal" font="default" size="100%">eng</style></language></record></records></xml>